PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441775.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 303aa    MW: 33151.8 Da    PI: 9.7719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.8e-14112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_016441775.1 112 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 156
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.67105161IPR017930Myb domain
SuperFamilySSF466896.13E-17107161IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17108159IPR006447Myb domain, plants
SMARTSM007171.8E-10109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-11111156IPR009057Homeodomain-like
PfamPF002491.8E-11112156IPR001005SANT/Myb domain
CDDcd001671.72E-9112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMSRSSSQSG TNGHNSFTSA GESSPDAAYG GGGEIMLFGV RVKVDPMRKS VSLNNLSQYE  60
LPNGYANENI NNNTNGGNNN ESSKVADEGY ASADDAVPHH SGSGRERKRG VPWTEEEHKL  120
FLLGLQKVGK GDWRGISRNF VKTRTPTQVA SHAQKYFLRR TNLNRRRRRS SLFDITTDSV  180
SVMPMEEKKN LQEHQVLAPT PLPPVENSKI NAFQVTPLPV TYDQGDQVSK SSSIFHRPIP  240
VLPLANLSRI ADLNLNQSSA MEASSLSLTL SLSLDQSQSS STRHSAFQVM SNFNNGESII  300
SVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441775.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B01e-102MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLK4BKL41e-117K4BKL4_SOLLC; Uncharacterized protein
STRINGSolyc03g113620.2.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-57MYB_related family protein